I have a pipeline which accepts an image, crops it into multiple small sections using masks, and then thresholds the cropped area to measure the total intensity in the region. Essentially, I am trying to find the ratio of black/white in an area. I am successfully measuring the intensity at each iteration, however I need to correlate this with date/time information which is in the name of the original image. I have already extracted this using the metadata command in the Load Images module, and am using this metadata to name each saved cropped and threshold image. My question is how to pass this metadata to my output file. I am making an import script in Matlab, and need to import intensity values correlated with the date/time information contained in the metadata. I have tried the “store file and path information to the save image” check box in the SaveImages module, however, I cannot find where this information is stored in the output file.
I’ve included my pipeline and an example image and mask in this post
Thanks for your help, and a great piece of software!
StLawrenceBatchfirstpositionnoalign.cp (123 KB)