really cool that your analysis if moving forward so swiftly
This sounds like a cool feature to have in ilastik. Unfortunately it isn’t implemented
However there are a couple of workarounds I can imagine that don’t require coding:
- use the center of the object as a reference and exclude objects based on proximity of the center to the image edges
- use the coordinates of the bounding box (an axis aligned rectangle that is drawn around your object. if any of those values are either
0, or at the maximum of the dimensions.
I skimmed through the forum a bit and was surprised that I didn’t find anything for Fiji. Maybe I am not using the right keywords…
@Christian_Tischer: do you know of a Fiji operation or plugin to remove labeled objects that are touching the boundary?