just a quick announcement that I’ve released two tools on Github that address data processing issues that arouse in our microscope facility, namely
- Converting tiled Leica Matrix Screener images to Big Stitcher/Big Data viewer files;
- Converting LaVision Biotech Ultramicroscope images to Big Stitcher/Big Data viewer files.
I created these tools because I was not able to import these files directly into Big Stitcher. Much of the heavy lifting under the GUI is done by the npy2bdv code by @nvladimus which in turn is based on imarispy by @talley.
There is lots of copy&pasted code between those two tools (might have made sense to factor out to common functionality into a separate package) and there is no guarantuee that it will work on your data set, but maybe it is useful for someone. Feel free to fork and modify as needed.