Yes I have, I tried moving the modules to the same folder but
nothing seemed to change?? I always get an error message in the
Terminal and nothing happens in Cellprofiler.
On the other hand I was playing a little with the PC version and was
writing a little pipeline and encountered some problems.
I want to calculate dots in mitotic cells. So I stained my cells
with a phospho histon antibody (labels mitotic DNA). I analyse my
picture using the “identifyPrimAutomatic” and then grow to the full
size off the cell using “IndetifySencondary” in the Distance-N mode.
I analyse the dots with “identifyPrimAutomatic” and do a “Relate”
This give me the resulting dots but I would like a number that gives
me the number of dots per cell. In addition I would like it in a
text or Excel format but didn’t get through how to do that. And
finaly I want to loop this pipeline through all my files. Can you
setup a loop that counts in different directories?