Regular expression for nested input folders in CP 2.0?

Hi,

I have a set of images in a nested directory structure, e.g. “image/setA/1.jpg, image/setB/1.jpg, …” and I’m trying to get CellProfiler to load all these images without flattening the directory structure. Is this possible? I tried inputting a regular expression like: “image//.jpg” and several variants of this into the “Text that these images have in common” box or to the “Default input folder” but it does not seem to work. Is there a way to do this? Thanks.

When you say “without flattening the directory structure,” what exactly do you mean? Do you want your output to reflect the sub-folder structure you’ve created?
-Mark