Ciao @k-dominik (and Vale) hope you are both good!
Just a quick one! Still using Ilastik- running it through a cluster so we are able to get a lot of data quickly now
I just noticed though that the order of column output (Object Classification) is not consistent. We want to via the terminal select the columns of interest (omitting the default required columns) for easier loading in my downstream R analysis.
below is the bash code we use, with it we select the columns we want by indexing.
OCsimple_TLKK12-021220_L11_p58.csv (19.7 KB) OCsimple_TLKK12-021220_L11_p60.csv (15.8 KB) OCsimple_TLKK12-021220_L11_p59.csv (18.8 KB)
cat OC*csv | grep -e ,cell, -e object_id | cut -d , -f 2,3,5,18,22 > OCsimple_$output_name.csv
our output has not been consistent though. Same index gives different columns outputs.