Random bug on opening CZI file: deformed image

I have data acquired with Zen Blue. They are multi positions tiles. I stitched and fused the data with Zen and then open the data with BioFormats. Some of the positions open fine and some are completely stretched, while everything looked fine on Zen. See screenshot, the image on the left is wrong, while the one the right is fine. They are two positions from the same file.

The same positions have the same issue on different computers (on Debian Jessie and on Mac OSX 10.11)
Has someone already encountered this problem?

This sounds like a bug in Bio-Formats and is best reported to the OME team. Uploading a sample dataset to their QA system might help to identify the issue.

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