After trying a lot. I see that in QuPath 0.2.0 m3 there is an option to output the image of the classifier in an instance of what seems imageJ. How can I save this image? I try all the commands from imageJ and nothing happens and I don’t see any options in QuPath itself to save this image. Can I do it via script?
The image show what I mean.
If it can’t be saved, then I would like to save a region using a request with a ROI but I want the classification colors not the original slide colors.
Using a very low resolution in the classifier I managed to create the polygons of the classified objects, but when I send it to imageJ I only see the outlines eventhough the fill option is 100%.