I am using the QuPath v0.2.0-m9 and trying the new multiplex classifier to analyze 4 channel image. After cell detection based on DAPI channel, I have trained the classifier for each of the three channels separately. Then I combined the three classifiers to get different cell phenotypes in the image.
I have a question regarding the class names. I got the following detections;
Class name “Ignore” comes with all the detections in all single and double positive detections as shown in the image above (eg, Env: Ignore or Env:CD3:Ignore) and below;
Let me know, if I did something wrong during building the classifiers or the classifications will be like this.