Python 3 Save Grayscale Image as a colormap

cellprofiler

#1

Hi,

I’ve found the option here, but the module will not pull up colormap option with any combination of settings.

Lee


#2

Hi,

It looks like this feature was removed in CP 3.0 but I think it’s possible the removal was accidental- you can track here for more information.


#3

Thanks!

I will need to remain in 2.2 until this is fixed since the work around is that 2.2 will automatically recolor grayscale images in SaveImages (png) based on the preferences setting “default color map”.

Also, i’d like to stress the importance of this feature. CellProfiler provides me with fantastic color image representations of my data, and I need this colormap option. Whether it is in graytocolor, or in SaveImages, it is a required option for my pipelines.


#4

Also, i’d like to stress the importance of this feature.

In that case, I’d definitely recommend commenting on the GitHub issue to let our SWE know that!