We are trying to process images directly from our OMERO server with CP (2.1.1 rev 6c2d896, Windows).
I saw the posts on that topic, but could not get it to work nevertheless.
Here is the minimalist .csv (also attached) that we use in our tests. The IDs are correct, and match images in our OMERO server.
Test_OMERO_to_CP.csv (203 Bytes)
We tried both the Input module and the Load module, specifying “No filtering” option. In both cases, we got errors (see attached file)
CP_OMERO_errors.pdf (17.4 KB)
The load module allowed us to establish a valid connection to the server, not the Input module.
When adding an “Identify primary objects” module, and running a test mode, we got a “not an image” error. That image opens fine in OMERO, and is a “regular” .TIFF image, successfully processed by CP when directly loaded from a folder.
What do we do wrong?
I could not find a tutorial or an example pipeline to help in that matter. Is there one?
Any advice would be appreciated!