I have a question regarding CellProfiler Analyst – I have multiple images that I want to identify primary objects for in CellProfiler, and then export those objects to CPA. However, I know that CPA doesn’t like dealing with more than 1 set of primary objects. How do you get around this issue when dealing with multiple images? I know there must be a way because the demo pipeline handles hundreds of images. It would be very helpful if I could take a look at the original CellProfiler pipeline that was used to create the CPA files. I tried downloading what was posted here:
But it appears to be a .mat file, and I am not able to load it. Please let me know if you have any ideas.