First apologies if this is covered elsewhere. I have not been able to find a fix to my issue in the other threads.
I have acquired a set of images in a 384 well format, 3 images per well, 1 channel (DAPI) on a Nikon microscope.
The files are exported from nd2 files to tiffs in the following format
Cellprofiler cannot guess the regular expression, and from other posts I have been using regex101.com to test out other expressions and I still cannot seem to get it. From the file name I would like to extract the cell number, channel and the position. The channel will always be ChannelHQ2 then either DAPI/GFP/RFP etc.
*please not that <> have been changed to ## to surround the phrase Well/Channel/Site due to how the forum formats the string
Any Help would be greatly appreciated,