I’ve tracked my files using Manual Tracking in FIJI, and want to reimport those xyt-track coordinates into TrackMate to extract mean intensity data for a radius around the xy coordinate in multiple channels. However, using the TrackMate CSV Importer tool, I’m not getting any intensity values (the display options shows 0.0 to 0.0, spot statistics all 0) for mean, min, max intensity. It looks like it has all of the other data, xy coordinates, time/frame, track index, and Trackmate is calculating velocity fine, just no intensity measurements. Any idea what I should do? Thanks for your help!
EDIT: I installed the TrackMate Extras, and now It shows me zeros for intensity in 10 channels