Hi again. Having problems opening Olympus oir files that are acquired in ‘line scan’ mode.
Now it seems Bio-Formats is not opening Olympus oir files acquired in ‘line scan’ mode. In general, I am acquiring about 10,000 lines into each oir file. Regardless of the number of lines scanned, opening the resulting oir into Fiji using Bio-Formats is giving me only 512 lines?
Here is an example oir file with 10,000 lines, each line is 140 pixels:
Here is the .tif output of the Olympus provided conversion software (NOT Fiji):
And here is the .tif when I drag and drop the same oir file onto Fiji
If someone could try and reproduce the bug/behavior and track down how to fix it, that would be wonderful.
Thanks for all your work and support,