I think I’ve found a problem with the Help / Modules Help dialog. If I select a module in the list and click OK, then the help is shown for the module above in the list. for example if I select “Average” then I get the help up for ApplyThreshold etc.
This appears to be a problem on both Linux (Centos 5.2 64 bit) and Windows (XP SP2 32 bit). I’m using CellProfiler 1.0.5811 on both platforms.