I am using ImageJ.m to run BoneJ functions via Matlab scripts. Everything goes fine, the only problem is that the “BoneJ Usage (Modern)” window popups every time I execute my scripts. There is not problem when I use Fiji in standalone mode. In the standalone mode, the “BoneJ Usage (Modern)” window appeared the first time I used BoneJ and it has never done it again. So, I guess it has to be a Matlab issue.
PS: I am using Matlab R2020b