I am trying to smooth images that have been aligned (cropped to aligned regions).
When I try to smooth the aligned images I continually run into
Traceback (most recent call last):
File “cellprofiler\gui\pipelinecontroller.pyc”, line 932, in do_step
File “cellprofiler\modules\smooth.pyc”, line 150, in run
File “cellprofiler\cpmath\smooth.pyc”, line 58, in smooth_with_function_and_mask
IndexError: index (494) out of range (0<=index<493) in dimension 1
I can get round this but i don’t want empty regions around the image.