I’ve found a weird behavior when I open metamorph nd files in FIJI. Specifically, if the name has an underscore followed by a number in it and there is more than one dataset with the same basename the window’s name in FIJI when I open the file is incorrect.
For example, for three metamorph datasets named run_, run_1 and run_2 consisting of a single plane with 2 channels, I have the following files:
run__w2Fast - TxRed.TIF
run_1_w2Fast - TxRed.TIF
run_2_w2Fast - TxRed.TIF
Note that the verbose part (example: w1BF-Phase-acq) is a descriptor of the setting used to acquire each channel, which in my case gets added automatically to the TIF file names.
When I open run_1 by dragging the nd file into FIJI, the window name is run_1_w1BF-Phase-acq.TIF
When I open run_2 or run_ by dragging the nd file into FIJI, the window name is also run_1_w1BF-Phase-acq.TIF, though the image shown is the correct one.
If, instead of an underscore, the files have a space, a dash or no space at all between the basename and the number, then window names have the proper number.
Metamorph version is 22.214.171.124, which I believe is the latest. FIJI (including BioFormats) is udpated as of today 2019.Aug.12, and is running ImageJ 1.52p.
I can provide a link to the minimal example described above, if that would be useful.