I have a pixelshift in my images which I automatically correct using “Align” in my CP pipeline. Later on, I save the aligned images and perform the analysis on them. Now I started to use CPA, but it would open the unaligned images and just one aligned image (grid_cropped_aligned_corrpow2) only. Which - of course - is not very meaningful. I have tried to change the settings in the CPA properties file, but it did not work as the path to the aligned images is not stored in the database (the aligned images are stored in the input folder but they have a different name).
Do you have any suggestions how I could save the path to the aligned images? Or any other workaround?