Orthogonal Views averaging multiple horizontal planes

I have a stack of OCT B-scan images, and I would like to average multiple slices over the Y-axis. Essentially, I would like something similar to the Orthogonal Views, but instead of visualizing a single XZ slice it should visualize the average of multiple slices. I don’t seem to find a way to do that in ImageJ. Is it possible?

I believe you should be able to do this by first re-slicing the stack and then plotting the Z-profile. Both operations are listed under Image > Stacks.

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Hi,

I introduce a plugin which I developed.
It can set Line width and create “Max” projected image.
If you need to display the averaged image, it may not be usable…

Please download and try it.

CrossSectionViewer

hwada

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Hi hwada, thank you for sharing it. Your plugin would exactly be what I need if it displayed the average (or a summation) of the projected images. Any chance that you could share the source code so I could adapt it for my needs?

Hi AndreaC,

I updated and uploaded the plugin.
This version has selecting function of projection method.
Actually averaging method was already in the code, so I just added UI.

hwada

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