I am using Orbit image analysis software for cell segmentation (object detection). After training my model, classifying the whole image (large NDPI file) and performing segmentation, I now want to save the results. However, I cannot find the option to save the processed image (whole image including markup - that is annotations).
If I try the “Save full image” option it complains that the image is too large (only for images with width*height <= 8000*8000). It does mention that you can use the Orbit Agent to download the file, however I cannot find any information about this in the documentation.
Also, is there a way to save the processed / segmented image (maximum classification opacity) using better quality (for ex. .tiff)? The default image out of “Save Classification Image” is very low quality and doesn’t include the yellow boundaries.
Additionally, I see that there is an option to send your image to Cell Profiler under the Tools tab, is there such an option for ImageJ as well?