I can not open stitched Nd2 files from our Slidescanner in Python.
I use Python 3.6 and nd2reader=3.1.0.
This is the metadata that is read:
<Deprecated ND2 C:\Data\slidescanner\20190514_000911_813\Slide1-1-1_ChannelBrightfield_Seq0000.nd2> Created: Unknown Image size: 3302x5146 (HxW) Frames: 1 Channels: Brightfield Fields of View: 1 Z-Levels: 0
When I open the file the numpy array has this dimension:
I have strange lines in the image.
The image is no longer RGB.
Images were acquired with NIS Elements 5.02.00.
Do you have any advise (other than using the dedicated Fiji Plugin…)
Thanks a lot &