I tried to import a Perkin Elmer Operetta Screening into Omero Server. My preferred option is an inplace import with ln_s. The Operetta Export contains a xml file as well as all the individual tif files from the screen. When I try to import only the xml file to avoid duplicates from command line using:
omero import --transfer=ln_s '/pathTo/Index.idx.xml' --skip upgrade
I get an error:
[ main] ERROR ome.formats.importer.cli.ErrorHandler - UNREADABLE_FILE: /pathTo/Images/Index.idx.xml
When I alternatively use the Insight client and select the xml file, I get the complete screen imported correctly.
Is there anything I am doing wrong?
Thanks for your help,