I am only able to obtain EF values via histogram where the count is on a pixel-by-pixel basis. I would like to obtain a table of EF values on an ellipsoid-by-ellipsoid basis for statistical analysis - in other words, the a/b and b/c values used to generate the Flynn plot.
I am able get an analogous set of values from the Flynn plot image itself by using the Analyze Particles function (inverting y coordinates, setting particle size range to match the plot circles, copy-pasting x-y coordinates into Excel, normalizing coordinate values to 1024x1024 pixels, calculating y-x). However, this is far too labor intensive given the number of samples I have. It also excludes data where the points overlap on the plot (as they are of a different size and shape).
Can the plugin be modified to include an output of the data used to generate the Flynn plot?