Nuclei-Gimp 2.10

analyze-particles
cellprofiler

#1

Hello I saw this video:

and I don’t understand how are you detect all nuclei? Thanks a lot


#2

In the video hand drawn segmentation is compared with ‘automated’ segmentation. This automated segmentation in Cell Profiler is done via different image processing steps, which are contained in what the person refers to as a ‘pipeline’.
The person does not tell the audience which image processing steps are present in their ‘pipeline’. To me the video is not so clear either.


#3

Hi,

That video is meant to be paired with this blog post, which links to a pipeline file to use; I’m not sure how that got left out of the video description, I’ll try to get it fixed. Thanks for letting us know!