Hi,
I found error of Fiji related nrrd file (maybe).
Open dcm file and then save as nrrd,
and re-opened this nrrd file and check Image>properties.
An original dicom file has (x,y,z)(0.9375000,0.9375000,3.0000000) “mm” Unit.
But, nrrd file has (x,y,z)(0.9375000,0.9375000,1.0000000).
mmm…
Hi @11110,
I don’t have a dicom file to test with, but when I tried to reproduce this with a tif, I got what I expected
(metadata were correct) when I reopened.
How are you saving the files?
File > Save As > Nrrd ...?
Or are you using bio-formats?
John
Hi John,
Thank you for your reply.
Yes, I used File > Save As > Nrrd … by Fiji current version.
I think this occurred lack z-axis voxel size info (such as slice thickness).
Do you think ?
Sample Dicom file is here.
tatsuaki