Need some help to get started

cellprofiler

#1

Hi,

i’m just trying to get a handle on your software, but are already stuck with the following problems:

-i cannot open any of the example pipelines posted on the website
-none of the OUTfiles can be opened
-trying to IdentifyPrim module: the number of identified objects is way off (much higher)

thanks for the help!

Surya


#2

Hi Surya,

  1. The pipeline files are meant to be opened by the CellProfiler software by going to File -> Load Pipeline. Everything should be up to date on the website.

  2. The OUT files are .mat files which only MATLAB can open. You can export your data from OUT files by going to Data Tools -> Export Data.

  3. There could be many reasons for this. Is it identifying objects when there are no objects, or is it splitting objects in to many little ones?

Mike