Nearest neighbor distance

Hi there,

I have a multi-channel stack of images. I would like to calculate the average/median distance of objects in one channel to the nearest object in the other channel. Is there any way to do this analysis? Any suggestion on identification of objects are also welcome.


Hi DP,

You can try the 3DManager, just import the objects from the two channels, and perform distance or co-localisation analysis :



1 Like

Thanks, Thomas! I will give that tool a try.