Multiview reconstruction Plugin suddenly not working

Dear All,

I hope I have used the correct tags etc.

I was wondering if anybody else has run into some issues with the multi-view reconstruction plugin as of lately.

Since yesterday, I am not able to define a dataset on any machine available to me.

I keep receiving the following error from the multi-view reconstruction application:

mpicbg.spim.data.SpimDataIOException: java.io.FileNotFoundException: \Desktop\Fiji.app\define (The system cannot find the file specified)
at mpicbg.spim.data.generic.XmlIoAbstractSpimData.load(XmlIoAbstractSpimData.java:88)
at net.preibisch.mvrecon.fiji.plugin.queryXML.GenericLoadParseQueryXML.parseXML(GenericLoadParseQueryXML.java:942)
at net.preibisch.mvrecon.fiji.plugin.queryXML.GenericLoadParseQueryXML.tryParsing(GenericLoadParseQueryXML.java:728)
at net.preibisch.mvrecon.fiji.plugin.queryXML.GenericLoadParseQueryXML.queryXML(GenericLoadParseQueryXML.java:329)
at net.preibisch.mvrecon.fiji.plugin.queryXML.LoadParseQueryXML.queryXML(LoadParseQueryXML.java:118)
at net.preibisch.mvrecon.fiji.plugin.queryXML.LoadParseQueryXML.queryXML(LoadParseQueryXML.java:109)
at net.preibisch.mvrecon.fiji.plugin.Data_Explorer.run(Data_Explorer.java:69)
at ij.IJ.runUserPlugIn(IJ.java:230)
at ij.IJ.runPlugIn(IJ.java:193)
at ij.Executer.runCommand(Executer.java:137)
at ij.Executer.run(Executer.java:66)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.io.FileNotFoundException: \Desktop\Fiji.app\define (The system cannot find the file specified)
at java.io.FileInputStream.open0(Native Method)
at java.io.FileInputStream.open(FileInputStream.java:195)
at java.io.FileInputStream.(FileInputStream.java:138)
at java.io.FileInputStream.(FileInputStream.java:93)
at sun.net.www.protocol.file.FileURLConnection.connect(FileURLConnection.java:90)
at sun.net.www.protocol.file.FileURLConnection.getInputStream(FileURLConnection.java:188)
at org.apache.xerces.impl.XMLEntityManager.setupCurrentEntity(Unknown Source)
at org.apache.xerces.impl.XMLVersionDetector.determineDocVersion(Unknown Source)
at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source)
at org.jdom2.input.sax.SAXBuilderEngine.build(SAXBuilderEngine.java:217)
at org.jdom2.input.sax.SAXBuilderEngine.build(SAXBuilderEngine.java:329)
at org.jdom2.input.SAXBuilder.build(SAXBuilder.java:1266)
at mpicbg.spim.data.generic.XmlIoAbstractSpimData.load(XmlIoAbstractSpimData.java:84)
… 11 more

If I ignore the errors and carry on the program gets stuck and doesnt create the xml

The log file looks like this:

Using spimdata version: 0.9-revision
Using spimreconstruction version: 0.3.3
Cannot parse ‘define’: mpicbg.spim.data.SpimDataIOException: java.io.FileNotFoundException: \ad.ucl.ac.uk\homem\ucbtpom\DesktopSettings\Desktop\Fiji.app\define (The system cannot find the file specified)
0
Thu Jul 25 13:33:21 BST 2019: Investigating file E:\SPIMages\24_07_19\mcherry_4angles\tiffs\Angle000.tif
Thu Jul 25 13:33:21 BST 2019: Detecting Tiles and Angles in Series 1 of 1
Thu Jul 25 13:33:21 BST 2019: Detecting Channels and Illuminations in Series 1 of 1
Thu Jul 25 13:33:21 BST 2019: Investigating file E:\SPIMages\24_07_19\mcherry_4angles\tiffs\Angle090.tif
Thu Jul 25 13:33:21 BST 2019: Detecting Tiles and Angles in Series 1 of 1
Thu Jul 25 13:33:21 BST 2019: Detecting Channels and Illuminations in Series 1 of 1
Thu Jul 25 13:33:21 BST 2019: Investigating file E:\SPIMages\24_07_19\mcherry_4angles\tiffs\Angle180.tif
Thu Jul 25 13:33:21 BST 2019: Detecting Tiles and Angles in Series 1 of 1
Thu Jul 25 13:33:21 BST 2019: Detecting Channels and Illuminations in Series 1 of 1
Thu Jul 25 13:33:21 BST 2019: Investigating file E:\SPIMages\24_07_19\mcherry_4angles\tiffs\Angle270.tif
Thu Jul 25 13:33:21 BST 2019: Detecting Tiles and Angles in Series 1 of 1
Thu Jul 25 13:33:21 BST 2019: Detecting Channels and Illuminations in Series 1 of 1

I would appreciate if anyone could help me out!

Kind regards,
Gideon

After a while the console shows this:

[ECLIPSE HELPER] Indexing annotations…

Thanks…

Hello, did you figure it out? I am getting similar error message…

best,
Sona