I’m using ImageJ to do some clean up and counting of pollen cell images. This is my first exposure to the program and I’m struggling. I’ve written a macro that seems to work reasonably well for image clean up and works with batches of images. However, when I run it, the “summary” window repopulates every one to two images…therefore I get A LOT of windows to manually rename, save, and copy data from to an excel file. Is there an “easy” way to accomplish getting all the image counts to display in one “summary” window? Or even to just automatically move all the lines of data into an Excel sheet for saving?
This is my simple, but mostly effective macro:
run("Subtract Background...", "rolling=50 light"); run("8-bit"); setOption("BlackBackground", false); run("Make Binary"); run("Watershed"); run("Analyze Particles...", "size=2000-Infinity circularity=0.40-1.00 show=Overlay exclude clear summarize"); saveAs("Results", "C:\\Users\\cope\\Desktop\\Test Images\\Summary.xls");