Multiple slides Interactive Image Alingment tool

Dear all,

I have been recently trying to work with the Analyze > Interactive image alingment (experimental) tool.
However, once I select the correct transformation parameters for the alignment I am not able to save the changes. Therefore, I approached it through scripting (using the script found here). Is there an option to iterate the script into performing multiple transformations without having to individually define the matrix per slide/image?
My goal is to transform at least 9 slides per ROI, therefore I am looking for alternatives as I need to repeat this process for different specimens and regions.

Thank you :slight_smile: