I have been working on my first imageJ macro. The goal of the macro is to make multiple selections per slice, fill those selections, and then save those fills as apart of a new substack. My first sub-goal is to make multiple selections per slice and have them stored in a single ROI. The code that I have been able to make work so far makes one selection per ROI.
Here is the first Image. As you can see it is apart of the 0001 group of ROIs and has one of the edge areas filled in as red.
Here is the second image. This fill is apart of the 0001 group but has a different region selected/filled.
Here is the third image. This fill is apart of the 0001 group and has a small region selected in the bottom left.
So I know my macro code is set to add a new ROI every selection. That is the only way I have been able to see that my code can in fact select all of things I want to select, but it does it across multiple ROIs. I want to do all of these selection in one ROI.
I hope I have been clear. If any clarity is needed I can provide as much as I know!