Multiple filters?

Can I create a chart showing more than 1 population (filter) on a plot at the same time using different colors?

Hmm, back in CPA1.0, there were parallel coordinate plots which allowed this, but we haven’t re-implemented them in CPA2. I believe the only plotting tool in CPA that allows different measures on the same plot is Boxplot, sorry. Sadly, we don’t have much bandwidth to handle any new features in CPA. You might try KNIME to inspect your CellProfiler data.