Dear Cellprofiler Forum,
I have a pipeline/cpproj file that will read multinucleated cells and collected information about counts etc… However, I am unable to elucidate a suitable means to produce SQL outputs with similar output format to previous CP2 results. I use a pythons script to generate large formatted text files for objects and images and then use Matlab for analysis. I do not understand how to overcome the problem ‘Nuclei is not a 1:1 relationship with other objects that may cause downstream problems.’ Another object container?
cp2macrofag2.cppipe (19.7 KB)