I am new to cell profiler.
I have a simple pipeline which spits out number of speckels.
I performed analysis on my images which took 3 hours; however,
after inspecting the output I realized that an essential data (which links image number to filename
is missing). I have now updated the parameters in
the ExportToSpreadsheet module.
Is it possible to simply perform the output without rerunning the analysis? I see that the .mat file
is made and I am hoping all the data is probably in there.
Welcome to CellProfiler!
The link between the ImageNumber and your images’ filenames should be in the PerImage table, named something like “DefaultOUT_Image.csv”. Look for columns named “FileName_<YOUR_CHANNEL_NAME>” and ImageNumber. Does that help?
Also, if you analysis is slow (and it sounds like it is), check out these tips on speeding it up:
Thank you very much.