Microscopy Image Browser updated to 2.65

Announcements
#1

Microscopy Image Browser was today updated to version 2.65.
As with the previous release the compiled version of MIB was made for R2019b

List of changes (http://mib.helsinki.fi/downloads.html):

  • Added Drag and drop files into the Image View panel
  • Added dialog with 30 new image filters ( Menu->Image->Image filters... )
  • Added dataset alignment using AMST: Align to Median Smoothed Template ( Menu->Dataset->Alignment )
  • Added wound healing assay ( Menu->Tools->Wound healing assay )
  • Added transformation of Z to C ( Menu->Dataset->Transform... )
  • Added additional options to the batch processing: file loop/combine files -> current MIB directory; selection/removal of multiple directories in the Directrory loops
  • Added backup of the full mibImage class
  • Added full backup for dataset transform, resize, crop operations
  • Added squeezing of material indices for models with more than 255 materials ( Segmentation panel->Squeeze button )
  • Added a new key shortcut (ā€˜nā€™) to increase index of the active material by 1 for the models with more than 255 materials
  • Added saving snapshots in PNG format
  • Added measurements to restore shuffled datasets
  • Updated resampling for batch processing mode
  • Swapped Log and Info buttons in the Path panel
  • Tweaked names of plugins to include spaces between capital letters
  • Optimized handling of Java classes
  • Updated Bio-Formats to 6.4.0 (requires Matlab R2017b or newer)
  • Plugins: Surface Area 3D - a plugin for analysis of 3D surfaces and contacts ( Menu->Plugins->Organelle analysis->Surface area3D )
  • Plugins: Spacial Control Points to generate a set of random points over the masked area ( Menu->Plugins->Plasmodesmata->Spatial control points )
  • Plugins: Cell Wall Thickness to calculate thickness of cell walls ( Menu->Plugins->Plasmodesmata->Cell wall thickness )

MIB can be updated from MIB->Menu->Help->Check for update or downloaded directly from the MIB website .
Available as Matlab code, or as compiled binaries for Windows and MacOS.

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