Hello! I hope everyone is doing great and staying safe!
I’m trying to translate the metadata of various .czi files to a useable form that can be used by the Grid/Collection stitching plugin (Type: positions from file, order: defined by TileConfiguration). I’ve included the xml file with the x and y coordinates of each tile below. Also, this link will show you the required format for the stitching plugin.
Now, this is just a question about how to translate this data. I don’t have a great background in coding. Could someone help and guide me through how to solve this problem?
If anyone is interested, this is the original forum that extensively highlights the problem: Stitching based on metadata
Thanks for your help! Let me know if you have any further questions!
xml file: SH5_7316x7395or7405-4_(1)_info.xml (187.2 KB)
required format for stitching: https://imagej.net/Image_Stitching#I_have_a_known_approximate_arrangement_for_the_tiles_but_it_is_not_any_of_the_grids