I think cell Profiler is struggling reading OIR (Olympus native format) metadata. The files are readable by the software, but the metadata is a problem.
I have try too the file as a Tiff and also It doesn’t work.
I think I need the information of the Metadata to be able to apply the (make projection) task and run the pipeline after that.
Please any comment ate suggestions are super welcome.
Thank you very much