Hi all,
I have the same issue as @nabila.elarouci when trying to import a .raw image to omero:
the upload failed and the message is:
loci.formats.UnknownFormatException: Unknown file format: C:\Users\cstoffel\Desktop\175_647nm-350-374.raw
at loci.formats.ImageReader.getReader(ImageReader.java:202)
at loci.formats.ImageReader.setId(ImageReader.java:844)
at ome.formats.importer.OMEROWrapper$4.setId(OMEROWrapper.java:167)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650)
at loci.formats.ChannelFiller.setId(ChannelFiller.java:223)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650)
at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:293)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650)
at loci.formats.Memoizer.setId(Memoizer.java:662)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650)
at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:427)
at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:576)
at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:384)
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:222)
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:174)
at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportCandidates(OMEROGateway.java:5965)
at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1113)
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:103)
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:49)
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:127)
at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
at java.lang.Thread.run(Thread.java:748)
at org.openmicroscopy.shoola.env.data.util.Status.update(Status.java:601)
at ome.formats.importer.ImportCandidates.safeUpdate(ImportCandidates.java:536)
at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:458)
at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:576)
at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:384)
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:222)
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:174)
at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportCandidates(OMEROGateway.java:5965)
at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1113)
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:103)
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:49)
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:127)
at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
at java.lang.Thread.run(Thread.java:748)
Caused by: loci.formats.UnknownFormatException: Unknown file format: C:\Users\cstoffel\Desktop\175_647nm-350-374.raw
at loci.formats.ImageReader.getReader(ImageReader.java:202)
at loci.formats.ImageReader.setId(ImageReader.java:844)
at ome.formats.importer.OMEROWrapper$4.setId(OMEROWrapper.java:167)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650)
at loci.formats.ChannelFiller.setId(ChannelFiller.java:223)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650)
at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:293)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650)
at loci.formats.Memoizer.setId(Memoizer.java:662)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650)
at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:427)
... 16 more
So it seems that OMERO doesn’t know the .raw file format, althought this format is readible by BioFormats? Also, I am able to open the same .raw file with FIJI, with the following specifications at import:
Does anyone have an explanation for that?
Thank you very much,
Claire