Good to hear that things have cleared up!
One last item: We noticed that while you said that you are running version 1.0.7522, the pipeline that you posted here was written for an earlier version. When you load the this pipeline into CellProfiler, do you get a message box saying that the some module settings have been updated, and other boxes asking you to check the saved variables?
If you’re not getting these messages, then your CellProfiler may be pointed at the wrong directory for the modules. In that case, go to File > Set Preferences, and make sure that the last box references the Module folder that you installed CellProfiler to.
If you are getting these messages, that means your version of CellProfiler is current but your pipeline version may not be. You may want to check your variables to make sure everything makes sense (which you may already have done), and re-save the pipeline. That will make sure the pipeline is saved with the current version settings.
Again, this is assuming that you are using the pipeline that you posted on the forum. If you have already modified it and saved it, it may be a moot point.