Measuring distance btw 3D objects

Hello, 1st post on this forum.

I’m using TrakEM2 to montage/align serial TEM images and using AreaLists to paint objects of interest. We’d like to measure the distance btw objects. Not much coding experience, but it seems like the 3DRoiManager plugin has the functionality to do this. Just not sure how to export files from TrakEM2 to use this plugin.

Hi and welcome @Jonathan_Perelmuter ,

In TrakEM2:
(right click) >Export > AreaLists as labels
will get you something you should be able push into either the 3d roi manager or 3d object counter.

John