I need the geometry from a marked polygon, e.g. all vertex coordinates or a reference vertex and polygon segment’s length and angle.
Any reference to a plugin or example is appreciated.
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Hello Klas -
Provided your “marked polygon” is packaged as a PolygonRoi,
you can query the PolygonRoi for its vertices.
Here is a jython (python) script that demonstrates this:
from ij.gui import Roi
from ij.gui import PolygonRoi
roi = PolygonRoi ([135, 160, 110], [110, 160, 160], Roi.POLYGON)
print roi
print roi.getXBase()
print roi.getXCoordinates()
print roi.getYBase()
print roi.getYCoordinates()
Note that the PolygonRoi vertices, as returned by
getXCoordinates() and getYCoordinates(), are relative
to the upper left corner of the Roi, as returned by getXBase()
and getYBase().
Thanks, mm
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Hi
@klaseh
With macros: https://imagej.nih.gov/ij/developer/macro/functions.html#G
getSelectionCoordinates(xpoints, ypoints)
Returns two arrays containing the X and Y coordinates, in pixels, of the points that define the current selection. See the SelectionCoordinates macro for an example. See also: selectionType, getSelectionBounds.
newImage ("hexagons", "8-bit ramp", 512, 512, 1);
//setTool("polygon");
run("Select None");
makePolygon(89,72,278,153,181,219,250,299,84,321,217,53);
// These macros demonstrate how to use the
// getSelectionCoordinates function.
macro "List XY Coordinates" {
requires("1.30k");
getSelectionCoordinates(x, y);
for (i=0; i<x.length; i++)
print(i+" "+x[i]+" "+y[i]);