I downloaded the Matlab Toolbox from Bio-Formats Downloads (OME), but when I ran bfUpgradeCheck I receive the following:
A new stable version of Bio-Formats is available
version = char(loci.formats.FormatTools.VERSION);
Returns version=5.1.2 rather than the expected 6.6.1 or equivalent.
Should Matlab’s jar be behind the current release? And if not, can the 6.6.1 Bio-Formats Package be switched out in the Matlab files?
I checked the newly-downloaded version because I was receiving a “Java Exception Error: Missing Library Java Advanced Imaging (JAI)”.
I tried to switch out bioformas_package.jar(6.6.1) and then received:
log4j:WARN No appenders could be found for logger (loci.formats.ClassList).
log4j:WARN Please initialize the log4j system properly.
ERROR: Java exception occurred:
loci.formats.FormatException: No IFDs found
I am running MATLAB 2021a and have Java 8 SE.
Any help greatly appreciated.