Mask Modifications

I have a set of encoded segmentation masks; however, I would like an automated way to remove some of them based on a feature that is not size or intensity-based. I have a spreadsheet that contains the encoded mask identifier with a column for retention (yes/no). Is there a batch way to do this so I don’t have to go into the ROI manager and manually delete objects? Thanks!

Hi @Biologically_Blonde

Not sure if this will help… but have you heard of the Extended Particle Analyzer in the Biovoxxel toolbox? That might be something you can use here … hope it helps!

eta :slight_smile:

1 Like


how are these Masks encoded?
is the problem to find the feature and then exclude the roi?
or the problem is to read the spreadsheet?

Have a nice day,

1 Like