Hey everyone,
I had an Imaging course last week, so this is my first try to make a macro myself in FIJI. I want to easily use the batch macro, to open my confocal files, then split the channels and merge them afterwards. There I want to set the LUTs do different colors add a scale bar to the composite, flatten this image and finally export all 4 images to png (3 individual channels in new LUT colors + the flattened composite with the scale bar).
I have tried my best with the macro. The problem is, that I need to put the image name into a variable (I called it “originalImageName”) to process all images without changing anything all the time. Here comes my Macro:
open("/Users/…");
originalImageName=getTitle();
run(“Split Channels”);
run(“Merge Channels…”, “c5=[selectWindow(C1-”+originalImageName")] c6=[selectWindow(C3-"+originalImageName")] c7=[selectWindow(C2-"+originalImageName")] create keep ignore");
run(“Scale Bar…”, “width=10 height=5 font=18 color=White background=None location=[Lower Right] bold overlay”);
run(“Flatten”);
The Error I get says: Error: ‘)’ expected in line 7:
Line 7 would be:
run(“Merge Channels…”, “c5=[selectWindow(C1-”+originalImageName")] c6=[selectWindow(C3-"+originalImageName")] c7=[selectWindow(C2-"+originalImageName")] create keep ignore");
Can someone help 
?
Best,
Emi