I have a pipeline running well on Linux which have Cellprofiler installed using yum package installation you have provided: http://cellprofiler.org/linux.html
Then we have installed a version of cellprofiler on our cluster, since it is not possible to install precompiled binary on our cluster, we built a version from the source. When I run the same pipleline, I got many errors as:
CP-JAVA 21:30:36.317 [Thread-0] ERROR loci.formats.ClassList - “loci.formats.in.SlideBook6Reader” is not valid.
CP-JAVA 21:30:36.483 [Thread-0] ERROR loci.formats.ClassList - “loci.formats.in.SlideBook6Reader” is not valid.
However, the process is still running and is outputting results. My question is: are these errors caused by running same pipleline on different version of Cellprofiler? Does it have any real impact on generating correct results?