Is there a way to limit the displacement of tiles when using Grid/Collection Stitching with a configuration given by a
Let’s say I have a TileConfiguration like this:
# Define the number of dimensions we are working on dim = 3 # Define the image coordinates Name_s1.tif; ; (-101849.934, 97292.0117, 6705) Name_s2.tif; ; (-100931.934, 97292.0117, 6705) Name_s3.tif; ; (-101849.934, 98023.7117, 6705) Name_s4.tif; ; (-100931.934, 98023.7117, 6705)
and I want to refine the alignment by calculating the overlap, but I want to limit the displacement to e.g. 50px in each x, y and z to not disturb the setup too much.
I had cases where there are false correspondences detected, and tiles end up in totally wrong positions in the result stack. In these cases, I’d rather choose to ignore those tiles when the displacement from the original position is too large. Is this possible?
I know the max/avg displacement threshold and absolute displacement threshold parameters mentioned in the documentation, but they seem to be unavailable when running in the Positions from file / Defined by TileConfiguration mode.
@StephanPreibisch, can you comment on that?