Leica lif file metadata error

Hi all, I hope the science treats you well.

I’m getting an error on grabbing the metadata from a folder of lif files. From looking at previous posts the current version should open these files, unless I read that wrong.

On clicking the update metadata (after selecting ‘Extract from image file headers’ I get the following:
Traceback (most recent call last):
File “cellprofiler\gui\moduleview.pyc”, line 1116, in callback
File “cellprofiler\gui\moduleview.pyc”, line 2012, in __on_do_something
File “cellprofiler\settings.pyc”, line 1944, in on_event_fired
File “cellprofiler\modules\metadata.pyc”, line 484, in
File “cellprofiler\modules\metadata.pyc”, line 860, in do_update_metadata
File “bioformats\formatreader.pyc”, line 953, in get_omexml_metadata
File “bioformats\formatreader.pyc”, line 188, in setId
File “cellprofiler\utilities\jutil.pyc”, line 785, in call
File “cellprofiler\utilities\jutil.pyc”, line 762, in fn
JavaException: Invalid Memory Block: found magic bytes 0, expected 112

I’m running CP 2.1.1 rev 6c2d896, on Win 7 64bit.

Please let me know if you need any further details or debug steps from me.


Hi all.
For completeness, I should mention that the lif file here was created using LAS AF Version [BETA], but if I open them in LAS X (not sure of exact release) and then save them from there it works fine. I’ll continue to keep track of software versions and/or settings to see if a pattern develops.