I have a number of .czi files from Ziess Axioscan Z1 which are not fully accessible in QuPath (same problem occurs in Definiens). When the images are loaded into QuPath, one of the high power regions (right most section captured) has pixel values of zero for the 3rd channel (of 3). This is only evident visually when you zoom in to resolution greater than x5, where the 3rd channel disappears.
Is this an issue that others have come across, and if so, is there a fix either prior to scanning, or that enables full access to the affected image file?
Thanks for any help.